Nov 21, 2025 · The MEME Suite Motif-based sequence analysis tools ... Development of the MEME Suite was funded by grant R01 GM103544 from the National Institutes of Health.

MEME discovers novel, ungapped motifs (recurring, fixed-length patterns) in your sequences (sample output from sequences). MEME splits variable-length patterns into two or more separate motifs.

MEME discovers novel, ungapped motifs (recurring, fixed-length patterns) in your sequences (sample output from sequences). MEME splits variable-length patterns into two or more separate motifs.

Motifs must be in MEME Motif Format. The web version of FIMO also allows you to type in motifs in additional formats. Note: FIMO does not score sequence positions that contain ambiguous …

Nov 21, 2025 · [Click a category to show its available databases. Within a category click a database to see details.]

The Suite provides motif discovery algorithms using both probabilistic (MEME) and discrete models (STREME), which have complementary strengths. It also allows discovery of motifs with arbitrary …

MEME-ChIP performs comprehensive motif analysis (including motif discovery) on sequences where the motif sites tend to be centrally located, such as ChIP-seq peaks (sample output from sequences).

Posted: 11/21/2025, 6:56:27 PM Notice As of 3:30 PM PDT 2025-11-22 version 5.5.9 of the MEME Suite is available. The MoMo application is now enabled once again.

Nov 21, 2025 · Notice As of 3:30 PM PDT 2025-11-22 version 5.5.9 of the MEME Suite is available. The MoMo application is now enabled once again.

Note: If you have fewer than 50 sequences, you might want to use MEME instead of STREME. Note: STREME will not include sequence positions that contain ambiguous characters in the motifs it …