BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or …

FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures.

Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download …

Tracer (now at version 1.7.2) is a software package for visualising and analysing the MCMC trace files generated through Bayesian phylogenetic inference. Tracer provides kernel density …

Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package. It …

To inform BEAUti/BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option. By default all the taxa are assumed to have a date of zero …

Downloading and installing BEAST on Windows BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees.

Jul 9, 2024 · BEAST X is the new name for BEAST v1 project and the first release version of this is v10.5.0 which supersedes v1.10.4 in the old version system. From now on we will use the …

BEASTGen can also be used to create BEAST XML files (as its name suggests). A template can be based on a BEAST XML file and be used to ‘insert’ data from another data file to create a …

Getting Started with BEAST Download and install BEAST The first step is to download BEAST and install it. We provide instructions for doing this on the common operating systems. We …